2LUS

NMR structure of Carcinoscorpius rotundicauda thioredoxin related protein 16 and its role in regulating transcription factor NF-kB activity

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	100 mM [U-100% 15N] sodium chloride, 5 mM [U-100% 15N] DTT, 1 mM [U-100% 15N] EDTA, 5 % [U-100% 15N] glycerol	95% H2O/5% D2O	100	7	ambient	298
2	3D HNCACB	100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol	95% H2O/5% D2O	100	7	ambient	298
3	3D CBCA(CO)NH	100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol	95% H2O/5% D2O	100	7	ambient	298
4	3D 1H-13C NOESY aliphatic	100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol	95% H2O/5% D2O	100	7	ambient	298
5	3D HCCH-TOCSY	100 mM [U-100% 13C; U-100% 15N] sodium chloride, 5 mM [U-100% 13C; U-100% 15N] DTT, 1 mM [U-100% 13C; U-100% 15N] EDTA, 5 % [U-100% 13C; U-100% 15N] glycerol	95% H2O/5% D2O	100	7	ambient	298
6	2D 1H-15N HSQC	100 mM [U-100% 15N] sodium chloride, 5 mM [U-100% 15N] DTT, 1 mM [U-100% 15N] EDTA, 8 mg/mL [U-100% 15N] Pf1 phage	95% H2O/5% D2O	100	7	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
torsion angle dynamics		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	data analysis	Sparky		Goddard
3	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	collection	TopSpin		Bruker Biospin
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.