2LUG
Solution NMR structure of a S72-S107 peptide of 18.5kDa murine myelin basic protein (MBP) in association with dodecylphosphocholine micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
2 | 3D HNCO | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
3 | 3D HN(CA)CO | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
4 | 3D HNCACB | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
5 | 3D CBCA(CO)NH | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
6 | 3D HACAN | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
7 | 3D HCCH-TOCSY | 1.47 mM [U-100% 13C; U-100% 15N] S72-S107 MBP peptide, 50 mM potassium phosphate, 100 mM Deuterated Dodecylphosphocholine | 90% H2O/10% D2O | 6.5 | ambient | 285 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 10500 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | CARA | Keller and Wuthrich | |
3 | backbone phi/psi torsion angle prediction | TALOS | Cornilescu, Delaglio and Bax | |
4 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
5 | structure solution | CS-ROSETTA | Shen, Lange, Delaglio, Rossi, Aramini, Liu, Eletsky, Wu, Singarapu, Lemak, ... and Bax | |
6 | refinement | CS-ROSETTA | Shen, Lange, Delaglio, Rossi, Aramini, Liu, Eletsky, Wu, Singarapu, Lemak, ... and Bax |