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NEDD4L WW2 domain in complex with a Smad7 derived peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride 90% H2O/10% D2O 7.2 ambient 285 2 2D 1H-1H TOCSY 1 mM NEDD4LWW2, 2 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride 90% H2O/10% D2O 7.2 ambient 285 3 2D 1H-1H NOESY 1 mM NEDD4LWW2, 2 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride 90% H2O/10% D2O 7.2 ambient 285 4 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride 90% H2O/10% D2O 7.2 ambient 285 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride 90% H2O/10% D2O 7.2 ambient 285
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 300 Conformers Submitted Total Number 30 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 peak picking CARA Keller and Wuthrich 4 chemical shift assignment CARA Keller and Wuthrich 5 structure solution CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read 6 refinement CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read