SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 2 | 2D 1H-1H TOCSY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 3 | 2D 1H-13C HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 4 | 2D 1H-1H COSY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 5 | 2D 1H-13C HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 6 | 2D 1H-31P-HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| 7 | 2D 1H-13C-HMBC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AMX | 400 |
| 2 | Bruker | AMX | 600 |
| 3 | Bruker | AMX | 700 |
| 4 | Bruker | AMX | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics | DGSA-distance geometry simulated annealing | X-PLOR NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | X-PLOR NIH | 2.30 | Schwieters, Kuszewski, Tjandra and Clore |
| 2 | data analysis | X-PLOR NIH | 2.30 | Schwieters, Kuszewski, Tjandra and Clore |
| 3 | structure solution | Sparky | Goddard | |
| 4 | data analysis | Sparky | Goddard | |
| 5 | structure solution | Felix | Accelrys Software Inc. | |
| 6 | data analysis | Felix | Accelrys Software Inc. | |
| 7 | refinement | Felix | Schwieters, Kuszewski, Tjandra and Clore | |














