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Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 2 mM RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'), 10 mM sodium phosphate, 50 mM sodium chloride, 2 mM EDTA 90% H2O/10% D2O 65 7 ambient 298 2 2D 1H-1H TOCSY 2 mM RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'), 10 mM sodium phosphate, 50 mM sodium chloride, 2 mM EDTA 90% H2O/10% D2O 65 7 ambient 298 3 2D DQF-COSY 2 mM RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'), 10 mM sodium phosphate, 50 mM sodium chloride, 2 mM EDTA 90% H2O/10% D2O 65 7 ambient 298 4 2D 1H-13C HSQC 2 mM RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3'), 10 mM sodium phosphate, 50 mM sodium chloride, 2 mM EDTA 90% H2O/10% D2O 65 7 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500
NMR Refinement Method Details Software simulated annealing X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR 3.851 Brunger 2 refinement X-PLOR 3.851 Brunger