2LOK

Solution NMR Structure of the uncharacterized protein from gene locus VNG_0733H of Halobacterium salinarium, Northeast Structural Genomics Consortium Target HsR50


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
22D 1H-13C HSQC0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
33D HNCO0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
43D CBCA(CO)NH0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
53D HNCACB0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
63D 1H-13C arom NOESY0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
7cCH_NOESY0.800 mM [U-100% 13C; U-100% 15N;U-2H] hsr50.009, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
8nNH_NOESY0.800 mM [U-100% 13C; U-100% 15N;U-2H] hsr50.009, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
93D HNHA0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
103D 1H-13C NOESY0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
113D HCCH-TOCSY0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
123D 1H-13C NOESY aliphatic0.800 mM [U-100% 13C; U-100% 15N;U-2H] hsr50.009, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
133D 1H-13C NOESY aliphatic0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
143D 1H-13C NOESY aromatic0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
153D 1H-15N NOESY0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
163D 1H-15N NOESY0.800 mM [U-100% 13C; U-100% 15N;U-2H] hsr50.009, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
172D 1H-15N HSQC0.674 mM [U-100% 13C; U-100% 15N] hsr50.007, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
183D HA(CO)NH0.726 mM [U-100% 13C; U-100% 15N] hsr50.005, 1 x Proteinase Inhibitors, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 200 mM NaCL, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS95% H2O/5% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance800
2BrukerAvance900
3VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamicscns 1.3 with RDC, noe, dihedral and h-bonds constraints using PARAM19 force field.CNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
2structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
3geometry optimizationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
5geometry optimizationCYANA3.0Guntert, Mumenthaler and Wuthrich
6structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
7processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8collectionTOPSPINBruker Biospin
9chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
10data analysisSPARKYGoddard
11geometry optimizationTALOS+Shen, Cornilescu, Delaglio and Bax
12geometry optimizationPALESPALES (Zweckstetter, Bax)
13structure validationPSVSBhattacharya, Montelione
14structure validationPDBSTAT5.5-expTejero; Montelione