☰ Navigation Tabs
Structural Basis for Bifunctional Zn(II) Macrocyclic Complex Recognition of Thymine Bulges in DNA, Structure of a Thymine bulge
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D DQF-COSY 1.8 mM DNA (5'-D(*GP*GP*CP*CP*GP*CP*AP*GP*TP*GP*CP*C)-3') 100% D2O 0.1 ambient 298 2 2D 1H-1H TOCSY 1.8 mM DNA (5'-D(*GP*GP*CP*CP*GP*CP*AP*GP*TP*GP*CP*C)-3') 100% D2O 0.1 ambient 298 3 2D 1H-1H NOESY 1.8 mM DNA (5'-D(*GP*GP*CP*CP*GP*CP*AP*GP*TP*GP*CP*C)-3') 100% D2O 0.1 ambient 298 4 2D 1H-1H NOESY 1.8 mM DNA (5'-D(*GP*GP*CP*CP*GP*CP*AP*GP*TP*GP*CP*C)-3') 100% D2O 0.1 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1000 Conformers Submitted Total Number 18 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 geometry optimization CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment Sparky 3.14 Goddard 3 data analysis Sparky 3.14 Goddard 4 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich