2LM1 | pdb_00002lm1

Solution NMR Structure of Lysine-specific demethylase lid from Drosophila melanogaster, Northeast Structural Genomics Consortium Target FR824D

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
2	3D HNCO	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
3	3D CBCA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
4	3D HNCACB	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
5	3D HCCH-COSY	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
6	3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
7	2D 1H-13C HSQC	1.3 mM [U-5% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
8	2D 1H-13C HSQC aliphatic	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298
9	2D 1H-13C HSQC aromatic	1.1 mM [U-100% 13C; U-100% 15N] FR824D, 100 mM sodium chloride, 5 mM DTT, 0.02 % sodium azide, 10 mM TRIS	95% H2O/5% D2O		6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
torsion angle dynamics, molecular dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinemen,structure solution,geometry optimization	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	refinement,geometry optimization,structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
3	data analysis,refinement	AutoStructure	2.1	Huang, Tejero, Powers and Montelione
4	data analysis,chemical shift assignment	AutoAssign	2.1	Zimmerman, Moseley, Kulikowski and Montelione
5	processing	PROSA		Guntert
6	data analysis,peak picking,chemical shift assignment	CARA		Keller and Wuthrich
7	collection	VnmrJ		Varian
8	geometry optimization	TALOS+		Shen, Cornilescu, Delaglio and Bax
9	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
10	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.