2LLV | pdb_00002llv

Solution structure of the yeast Sti1 DP1 domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
2	2D 1H-13C HSQC	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
3	2D 1H-13C HSQC aromatic	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
4	2D 1H-1H NOESY	0.5 mM DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
5	3D HNCO	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
6	3D HN(CA)CO	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
7	3D HN(CO)CA	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
8	3D HNCA	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
9	3D CBCA(CO)NH	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
10	3D HNCACB	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
11	3D HCCH-TOCSY	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
12	3D HCCH-COSY	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
13	3D C(CO)NH	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
14	3D HNHA	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
15	3D HNHB	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
16	3D 1H-13C NOESY	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
17	3D 1H-15N NOESY	0.5 mM [U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
18	3D CNH NOESY	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
19	3D CCH NOESY	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
20	3D NNH NOESY	0.5 mM [U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
21	2D HBCBCGCDHD	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
22	2D HBCBCGCDCEHE	0.5-3 mM [U-99% 13C; U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293
23	2D 1H-15N HSQC-IPAP	0.5 mM [U-99% 15N] DP1, 50 mM potassium chloride, 50 mM potassium phosphate, 0.2 w/v sodium azide	95% H2O/5% D2O	0.35	7.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	900
2	Bruker	DMX	750
3	Bruker	DMX	600

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	21
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	data analysis	Sparky		Goddard
3	chemical shift assignment	Sparky		Goddard
4	peak picking	Sparky		Goddard
5	data analysis	TALOS		Cornilescu, Delaglio and Bax
6	processing	TopSpin		Bruker Biospin
7	collection	TopSpin		Bruker Biospin
8	data analysis	ProcheckNMR		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho
9	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore