Experiment: 2LLM

Structure of amyloid precursor protein's transmembrane domain

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
2	2D 1H-13C HSQC	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
3	3D HNCO	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
4	3D HNCA	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
5	3D HN(CO)CA	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
6	3D HCCH-TOCSY	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
7	3D 1H-13C NOESY aliphatic	0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC	95% H2O/5% D2O	20	4.6	ambient	318
8	2D 1H-15N HSQC	0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC	95% H2O/5% D2O	20	4.6	ambient	318
9	3D 1H-15N NOESY	0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC	95% H2O/5% D2O	20	4.6	ambient	318
10	3D 1H-15N TOCSY	0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC	95% H2O/5% D2O	20	4.6	ambient	318

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	TopSpin		Bruker Biospin
3	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
4	refinement	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
5	geometry optimization	MOLMOL		Koradi, Billeter and Wuthrich
6	visualization	MOLMOL		Koradi, Billeter and Wuthrich
7	refinement	TALOS+		Cornilescu, Delaglio and Bax
8	structure solution	TALOS+		Cornilescu, Delaglio and Bax
9	chemical shift assignment	CARA		R.L.J.Keller
10	data analysis	CARA		R.L.J.Keller
11	peak picking	CARA		R.L.J.Keller