2LLA

NMR solution structure ensemble of domain 11 of the echidna M6P/IGF2R receptor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
22D 1H-13C HSQC100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
33D CBCA(CO)NH100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
43D C(CO)NH100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
53D HNCO100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
63D HNCACB100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
73D H(CCO)NH100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
83D 1H-15N NOESY100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
93D 1H-13C NOESY100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
103D HNCA100 uM sodium azide, 10 mM sodium phosphate, 1 mM EDTA, 7 % D2O, 93 % H2O, 0.5 mM [U-95% 13C; U-95% 15N] M6P/IGF2_receptor93% H2O/7% D2O0.015.50ambient298.15
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianVNMRS600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingRECOORD water refinementARIA
NMR Ensemble Information
Conformer Selection CriteriaSTRUCTURES WITH THE LOWEST ENER
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using a combination of NOE restraints, dihedral restraints predicted from TALOS and hydrogen bond restraints initially predicted from the homologous human domain 11 IGF2R structure (2CNJ)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionARIA1.2Linge, O'Donoghue and Nilges
2refinementARIA1.2Linge, O'Donoghue and Nilges
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4data analysisTALOSCornilescu, Delaglio and Bax
5chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
6refinementProcheckNMRLaskowski and MacArthur
7collectionVNMRJ2.2cVarian
8chemical shift assignmentAnalysis2.1CCPN
9refinementAnalysis2.1CCPN
10peak pickingAnalysis2.1CCPN
11data analysisCS23D1.0Wishart DS, Arndt D, Berjanskii M, Tang P, Zhou J, Lin G.