2LJ7
3D solution structure of plant defensin Lc-def
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
2 | 2D 1H-1H NOESY | 1 mM Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
3 | 2D DQF-COSY | 1 mM Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
4 | 2D 1H-13C HSQC | 1 mM Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
5 | 3D HNHA | 0.5 mM [U-100% 15N] Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
6 | 3D HNHB | 0.5 mM [U-100% 15N] Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
7 | 3D 1H-15N NOESY | 0.5 mM [U-100% 15N] Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 | |
8 | 3D 1H-15N TOCSY | 0.5 mM [U-100% 15N] Lc-def | 90% H2O/10% D2O | 0 | 5.0 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XEASY |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | XEASY | Keller and Wuthrich | |
2 | peak picking | XEASY | Keller and Wuthrich | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | data analysis | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |