2LIA
Solution NMR structure of a DNA dodecamer containing the 7-aminomethyl-7-deaza-2'-deoxyguanosine adduct
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.25 mM [U-2H] DNA dodecamer, 10 mM [U-2H] sodium phosphate, 200 mM [U-2H] sodium chloride, 0.011 M [U-2H] sodium azide, 0.05 mM [U-2H] sodium EDTA | 100% D2O | 0.21 | 7 | ambient | 298 | |
2 | 2D 1H-1H COSY | 0.25 mM [U-2H] DNA dodecamer, 10 mM [U-2H] sodium phosphate, 200 mM [U-2H] sodium chloride, 0.011 M [U-2H] sodium azide, 0.05 mM [U-2H] sodium EDTA | 100% D2O | 0.21 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 42 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 2.0.b.6 | Bruker Biospin |
2 | chemical shift assignment | Sparky | Goddard | |
3 | refinement | Amber | 10 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm |