2LHD
GB98 solution structure
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
2 | 3D CBCA(CO)NH | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
3 | 3D HNCACB | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
4 | 3D C(CO)NH | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
5 | 3D HNCO | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
6 | 3D 1H-15N NOESY | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
7 | 3D 1H-13C NOESY aliphatic | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
8 | 3D 1H-13C NOESY aromatic | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
9 | 3D H(CCO)NH | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 | |
10 | 3D HBHA(CO)NH | 0.1-0.3 mM [U-100% 13C; U-100% 15N] GB98, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 | 7.0 | ambient | 278 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure determination | CNS | Brunger A. T. et.al. | |
2 | collection | TopSpin | Bruker Biospin | |
3 | data processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data processing display | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | data analysis | Sparky | Goddard | |
6 | structure display | MOLMOL | Koradi, Billeter and Wuthrich | |
7 | secondary structure prediction | CSI | Wishart, D.S. and B.D. Sykes. | |
8 | dihedral angle restraints determination | TALOS | Cornilescu, Delaglio and Bax | |
9 | protein structure quality check | Procheck | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho | |
10 | generate noe peak lists | NOEID | Lisa Parsons | |
11 | refinement | CNS | Brunger A. T. et.al. |