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Solution NMR Structure of Fumarate reductase flavoprotein subunit from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR145J
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 2 2D 1H-13C HSQC 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 3 3D HNCO 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 4 3D CBCA(CO)NH 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 5 3D HNCACB 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 6 3D 1H-13C arom NOESY 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 7 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 8 3D HCCH-TOCSY 1.41 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293 9 2D 1H-13C HSQC aliphatic 0.90 mM [U-100% 13C; U-100% 15N] LpR145J 90% H2O/10% D2O 7.5 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, molecular dynamics, simulated annealing, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 9 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 10 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 11 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 data analysis XEASY Bartels et al. 13 peak picking XEASY Bartels et al. 14 chemical shift assignment XEASY Bartels et al. 15 collection TopSpin Bruker Biospin 16 collection VnmrJ Varian 17 data analysis Sparky Goddard 18 geometry optimization TALOS+ Shen, Cornilescu, Delaglio and Bax