2LEJ
human prion protein mutant HuPrP(90-231, M129, V210I)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
3 | 2D 1H-13C HSQC aromatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
4 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
5 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
6 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
9 | 3D 1H-13C NOESY aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
10 | 3D 1H-13C NOESY aromatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
11 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | Uniform NMR System | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | Sparky | 3.115 | Goddard |
3 | peak picking | Sparky | 3.115 | Goddard |
4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
5 | refinement | YASARA | 11.5.22 | YASARA Biosciences |
6 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
7 | data analysis | WHAT IF | Vriend |