human prion protein mutant HuPrP(90-231, M129, V210I)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 2 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
| 3 | 2D 1H-13C HSQC aromatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
| 4 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 5 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 6 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 7 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 8 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
| 9 | 3D 1H-13C NOESY aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
| 10 | 3D 1H-13C NOESY aromatic | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
| 11 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | |||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | Uniform NMR System | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | chemical shift assignment | Sparky | 3.115 | Goddard |
| 3 | peak picking | Sparky | 3.115 | Goddard |
| 4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 5 | refinement | YASARA | 11.5.22 | YASARA Biosciences |
| 6 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
| 7 | data analysis | WHAT IF | Vriend | |
