2LA8 | pdb_00002la8

Solution structure of INAD PDZ5 complexed with Kon-tiki peptide

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 15N] protein-1, 10 mM DTT-2, 50 mM TRIS-3, 50 mM sodium chloride-4, 1 mM EDTA-5	90% H2O/10% D2O	0.1	7	ambient	303
2	2D 1H-1H NOESY	1 mM protein-16, 10 mM [U-100% 2H] DTT-17, 50 mM [U-100% 2H] TRIS-18, 50 mM sodium chloride-19, 1 mM EDTA-20	100% D2O	0.1	7	ambient	303
3	2D 1H-1H TOCSY	1 mM protein-16, 10 mM [U-100% 2H] DTT-17, 50 mM [U-100% 2H] TRIS-18, 50 mM sodium chloride-19, 1 mM EDTA-20	100% D2O	0.1	7	ambient	303
4	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM DTT-7, 50 mM TRIS-8, 50 mM sodium chloride-9, 1 mM EDTA-10	90% H2O/10% D2O	0.1	7	ambient	303
5	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM DTT-7, 50 mM TRIS-8, 50 mM sodium chloride-9, 1 mM EDTA-10	90% H2O/10% D2O	0.1	7	ambient	303
6	3D 1H-15N NOESY	1 mM [U-100% 15N] protein-1, 10 mM DTT-2, 50 mM TRIS-3, 50 mM sodium chloride-4, 1 mM EDTA-5	90% H2O/10% D2O	0.1	7	ambient	303
7	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein-11, 10 mM [U-100% 2H] DTT-12, 50 mM [U-100% 2H] TRIS-13, 50 mM sodium chloride-14, 1 mM EDTA-15	100% D2O	0.1	7	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	peak picking	PIPP		Garrett
5	peak picking	Sparky		Goddard
6	collection	VnmrJ		Varian