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NMR structure of the protein YP_557733.1 from Burkholderia xenovorans
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 2 2D 1H-13C HSQC 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 3 3D 1H-15N NOESY 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 4 3D 1H-13C NOESY aliphatic 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 5 3D 1H-13C NOESY aromatic 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 6 5D APSY-HACACONH 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 7 4D APSY-HACANH 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298 8 5D APSY-CBCACONH 1 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 4.5 mM sodium azide 95% H2O/5% D2O 0.225 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment UNIO Unio Herrmann Wuthrich 3 structure solution UNIO Unio Herrmann Wuthrich 4 processing UNIO Unio Herrmann Wuthrich 5 collection TopSpin Bruker Biospin 6 processing TopSpin Bruker Biospin 7 data analysis TopSpin Bruker Biospin 8 chemical shift assignment CARA Keller and Wuthrich 9 data analysis CARA Keller and Wuthrich 10 refinement OPAL Luginbuhl, Guntert, Billeter and Wuthrich