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Solution structure of the MoCVNH-LysM module from the rice blast fungus Magnaporthe oryzae protein (MGG_03307)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 2 3D HNCACB 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 3 3D CBCA(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 4 3D H(CCO)NH 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 5 3D C(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 6 3D HCCH-TOCSY 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 7 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 8 3D 1H-13C NOESY aliphatic 0.5 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298 9 2D 1H-15N HSQC 0.5 mM [U-100% 15N] protein 90% H2O/10% D2O 0.020 5.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 800 3 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing the 25 lowest energy structures were further refined using explicit water. TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1000 Conformers Submitted Total Number 25 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView 5.2.2_01 Johnson, One Moon Scientific 4 automatic noe assignment CYANA 2.1 Guntert, Mumenthaler and Wuthrich 5 structure calculation CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read 6 refinement CNS