2L9B | pdb_00002l9b

Heterodimer between Rna14p monkeytail domain and Rna15p hinge domain of the yeast CF IA complex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	0.2-1 mM [U-99% 15N] Rna15p, 0.2-1 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
2	3D 1H-13C NOESY	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
3	3D 1H-13C NOESY aliphatic	0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna15p, 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
4	3D 1H-13C NOESY aliphatic	1 mM [U-15N, U-13C]-Leu Rna15p, 1 mM [U-15N, U-13C]-Leu Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
5	2D 1H-15N TROSY spin-state selective	0.2-1 mM [U-99% 15N] Rna15p, 0.2-1 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
6	2D 1H-15N TROSY spin-state selective	0.2-1 mM [U-99% 15N] Rna15p, 0.2-1 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
7	3D HNCO	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
8	3D HN(CA)CO	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
9	3D HNCA	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
10	3D HN(CO)CA	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
11	3D HNCACB	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
12	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
13	3D HNHA	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
14	3D C(CO)NH	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
15	3D H(CCO)NH	1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna15p, 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
16	2D 1H-15N HMBC	0.2-1 mM [U-99% 15N] Rna15p, 0.2-1 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
17	2D 1H-15N HSQC	0.2-1 mM [U-99% 15N] Rna15p, 0.2-1 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
18	3D H(CCO)NH	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
19	2D 1H-13C HSQC	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
20	2D HBHD	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
21	2D HBHE	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
22	3D HCACO	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
23	3D HCCH-TOCSY	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
24	3D HCCH-TOCSY	0.4 mM [U-99% 13C; U-99% 15N] Rna15p, 0.4 mM [U-99% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
25	3D H(CCO)NH	0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna15p, 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H, 1H I,L,V-methyl] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
26	2D 1H-13C HSQC	0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna15p, 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
27	3D HCCH-TOCSY	0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna15p, 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
28	3D HCCH-TOCSY	0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna15p, 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2H; 1H I,L,V-methyl] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
29	3D HNCO	1 mM [U-15N, U-13C]-Leu Rna15p, 1 mM [U-15N, U-13C]-Leu Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	90% H2O/10% D2O	0.07	6.5	ambient	303
30	3D HCACO	1 mM [U-15N, U-13C]-Leu Rna15p, 1 mM [U-15N, U-13C]-Leu Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
31	3D HCCH-TOCSY	1 mM [U-15N, U-13C]-Leu Rna15p, 1 mM [U-15N, U-13C]-Leu Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
32	3D HCCH-TOCSY	1 mM [U-15N, U-13C]-Leu Rna15p, 1 mM [U-15N, U-13C]-Leu Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303
33	2D 1H-13C HSQC CT	1 mM [U-10% 13C; U-99% 15N] Rna15p, 1 mM [U-10% 13C; U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 10 % D2O	100% D2O	0.07	6.5	ambient	303
34	2D DQF-COSY	0.2 mM [U-99% 15N] Rna15p, 0.2 mM [U-99% 15N] Rna14p, 20 mM sodium phosphate, 50 mM sodium chloride, 2 mM DTT, 100 % D2O	100% D2O	0.07	6.5	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	20
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	peak picking	Sparky		Goddard
4	chemical shift assignment	Sparky		Goddard
5	structure solution	ARIA	1.2	Linge, O'Donoghue and Nilges
6	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
7	refinement	ARIA1.2/CNS1.1