2L96
Solution structure of LAK160-P7
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 1mM LAK160-P7; 100mM SDS; 5mM TRIS; 90% H2O/10% D2O | 90% H2O/10% D2O | 105mM | 7 | ambient | 310 | |
| 2 | 2D 1H-1H NOESY | 1mM LAK160-P7; 100mM SDS; 5mM TRIS; 90% H2O/10% D2O | 90% H2O/10% D2O | 105mM | 7 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Standard ARIA refinement in water | Sparky |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | peak picking | Sparky | 3.113 | Goddard |
| 2 | chemical shift assignment | Sparky | 3.113 | Goddard |
| 3 | structure solution | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
| 4 | refinement | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
| 5 | collection | TopSpin | 3.0 | Bruker Biospin |
| 6 | processing | TopSpin | 3.0 | Bruker Biospin |
| 7 | data analysis | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
| 8 | data analysis | AQUA | 3.2 | Rullmann, Doreleijers and Kaptein |
| 9 | structure solution | CNSSOLVE | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 10 | data analysis | Python | 2.6.5 | Python Software Foundation |
