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Determination of the three-dimensional structure of adrenomedullin, a first step towards the analysis of its interactions with receptors and small molecules
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-1H TOCSY
0.33 mM AM, 20 mM sodium phosphate, 23 mM [U-2H] SDS, 90 % H2O, 10 % [U-99% 2H] D2O
90% H2O/10% D2O
0
7.5
ambient
298
2
2D 1H-1H NOESY
0.33 mM AM, 20 mM sodium phosphate, 23 mM [U-2H] SDS, 90 % H2O, 10 % [U-99% 2H] D2O
90% H2O/10% D2O
0
7.5
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
800
NMR Refinement
Method
Details
Software
simulated annealing, molecular dynamics
Energy minimization
CYANA
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
structure solution
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
2
refinement
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
3
refinement
Amber
8
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
4
energy minimization
Amber
8
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm