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Solution structure of the third Immunoglobulin-like domain of nectin-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 2 3D HNCO 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 3 3D HNCA 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 4 3D HN(CO)CA 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 5 3D HNCACB 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 6 3D HBHA(CO)NH 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 7 3D H(CCO)NH 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 8 3D HCCH-TOCSY 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 9 3D 1H-15N TOCSY 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 10 3D 1H-15N NOESY 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298 11 3D 1H-13C NOESY 10 mM sodium phosphate, 50 mM sodium chloride, 0.02 v/v sodium azide 90% H2O/10% D2O 0.0 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750
NMR Refinement Method Details Software simulated annealing VNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR Varian 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment Pronto Kjur, Andersen and Poulsen 4 peak picking Pronto Kjur, Andersen and Poulsen 5 data analysis TALOS Cornilescu, Delaglio and Bax 6 refinement ARIA Linge, O'Donoghue and Nilges 7 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 8 structure solution CYANA Guntert, Mumenthaler and Wuthrich 9 refinement CYANA Guntert, Mumenthaler and Wuthrich