2L7B | pdb_00002l7b

NMR Structure of full length apoE3

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-13C; U-15N; U-2H] apoE3, 100 mM sodium phosphate, 10 mM DTT, 5 mM [U-100% 2H] EDTA, 1 mM DSS	90% H2O/10% D2O	0.1	6.9	ambient	303
2	3D HNCA	1 mM [U-13C; U-15N; U-2H] apoE3, 100 mM sodium phosphate, 10 mM DTT, 5 mM [U-100% 2H] EDTA, 1 mM DSS	90% H2O/10% D2O	0.1	6.9	ambient	303
3	3D HN(CO)CA	1 mM [U-13C; U-15N; U-2H] apoE3, 100 mM sodium phosphate, 10 mM DTT, 5 mM [U-100% 2H] EDTA, 1 mM DSS	90% H2O/10% D2O	0.1	6.9	ambient	303
4	3D HNCACB	1 mM [U-13C; U-15N; U-2H] apoE3, 100 mM sodium phosphate, 10 mM DTT, 5 mM [U-100% 2H] EDTA, 1 mM DSS	90% H2O/10% D2O	0.1	6.9	ambient	303
5	3D CBCA(CO)NH	1 mM [U-13C; U-15N; U-2H] apoE3, 100 mM sodium phosphate, 10 mM DTT, 5 mM [U-100% 2H] EDTA, 1 mM DSS	90% H2O/10% D2O	0.1	6.9	ambient	303
6	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N; U-50% 2H] apoE3, 10 mM DTT, 1 mM DSS, 5 mM [U-100% 2H] EDTA, 100 mM sodium phosphate	90% H2O/10% D2O	0.1	6.9	ambient	303
7	4D CN NOESY	1 mM [U-100% 13C; U-100% 15N; U-50% 2H] apoE3, 10 mM DTT, 1 mM DSS, 5 mM [U-100% 2H] EDTA, 100 mM sodium phosphate	90% H2O/10% D2O	0.1	6.9	ambient	303
8	3D HCCH-TOCSY	1 mM [U-100% 13C; U-100% 15N; U-50% 2H] apoE3, 10 mM DTT, 1 mM DSS, 5 mM [U-100% 2H] EDTA, 100 mM sodium phosphate	90% H2O/10% D2O	0.1	6.9	ambient	303
9	3D CCC-TOCSY	1 mM [U-100% 13C; U-100% 15N; U-50% 2H] apoE3, 10 mM DTT, 1 mM DSS, 5 mM [U-100% 2H] EDTA, 100 mM sodium phosphate	90% H2O/10% D2O	0.1	6.9	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing, distance geometry		VNMR

NMR Ensemble Information
Conformer Selection Criteria	all calculated structures submitted
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VNMR		Varian
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	TALOS		Cornilescu, Delaglio and Bax
4	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
5	chemical shift assignment	PIPP		Garrett
6	chemical shift assignment	NMRView		Johnson, One Moon Scientific
7	geometry optimization	ProcheckNMR		Laskowski and MacArthur
8	refinement	ProcheckNMR		Laskowski and MacArthur
9	geometry optimization	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
10	data analysis	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
11	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read