2L66
The DNA-recognition fold of Sso7c4 suggests a new member of SpoVT-AbrB superfamily from archaea.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 1 mM Sso7c4-4, 20 mM potassium phosphate-5, 50 mM sodium chloride-6 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 | |
2 | 2D 1H-1H TOCSY | 1 mM Sso7c4-4, 20 mM potassium phosphate-5, 50 mM sodium chloride-6 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 | |
3 | 2D 1H-1H NOESY | 1 mM Sso7c4-4, 20 mM potassium phosphate-5, 50 mM sodium chloride-6 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 | |
4 | 2D 1H-15N HSQC | 1.5 mM [U-99% 15N] Sso7c4-1, 20 mM potassium phosphate-2, 50 mM sodium chloride-3 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 | |
5 | 3D 1H-15N NOESY | 1.5 mM [U-99% 15N] Sso7c4-1, 20 mM potassium phosphate-2, 50 mM sodium chloride-3 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 | |
6 | 3D 1H-15N TOCSY | 1.5 mM [U-99% 15N] Sso7c4-1, 20 mM potassium phosphate-2, 50 mM sodium chloride-3 | 90% H2O/10% D2O | 0.05 | 5.0 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 800 |
2 | Bruker | Avance | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | SPARKY |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | SPARKY | 3.2 | Goddard |
2 | collection | TOPSPIN | 2.1 | Bruker Biospin |
3 | processing | TOPSPIN | 2.1 | Bruker Biospin |