2L5A

Structural basis for recognition of centromere specific histone H3 variant by nonhistone Scm3


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N TROSY0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
22D 1H-1H NOESY0.8-0.85 mM scCSH-6100% D2O0.005.4ambient atm308
32D 1H-13C HMQC0.8-0.85 mM [U-13C methyl; U-15N; U-2H] scCSH-390% H2O/10% D2O0.005.4ambient atm308
43D trHNCACB0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
53D trHNCOCACB0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
63D trHNCA0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
73D trHNCOCA0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
83D trHNCO0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
93D trHNCACO0.8-0.85 mM [U-100% 15N] scCSH-290% H2O/10% D2O0.005.4ambient atm308
103D HCCH-TOCSY0.8-0.85 mM [U-13C ; U-15N] scCSH-5100% D2O0.005.4ambient atm308
113D CCCH-TOCSY0.8-0.85 mM [U-13C ; U-15N] scCSH-5100% D2O0.005.4ambient atm308
123D HBHA(CO)NH0.8-0.85 mM [U-13C ; U-15N] scCSH-5100% D2O0.005.4ambient atm308
133D H(CCO)NH0.8-0.85 mM [U-13C ; U-15N] scCSH-5100% D2O0.005.4ambient atm308
143D 1H-15N NOESY0.8-1.0 mM [U-100% 15N] scCSH-190% H2O/10% D2O0.005.4ambient atm308
153D 1H-15N NOESY0.8-0.85 mM [U-13C methyl; U-15N; U-2H] scCSH-390% H2O/10% D2O0.005.4ambient atm308
163D 1H-13C NOESY0.8-0.85 mM [U-13C ; U-15N] scCSH-5100% D2O0.005.4ambient atm308
173D 1H-13C NOESY0.8-0.85 mM [U-13C methyl; U-15N; U-2H] scCSH-390% H2O/10% D2O0.005.4ambient atm308
183D HCCH-TOCSY0.8-0.85 mM [U-13C ; U-15N; 35%-2H] scCSH-490% H2O/10% D2O0.005.4ambient atm308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDRX600
3BrukerDRX800
4BrukerDRX900
5VarianINOVA800
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealing, molecular dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisNMRPipeupdated versionDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRView7.9.1Johnson, One Moon Scientific
3data analysisTALOSupdated versionCornilescu, Delaglio and Bax
4structure solutionX-PLOR_NIH2.25Schwieters, Kuszewski, Tjandra and Clore
5refinementX-PLOR_NIH2.25Schwieters, Kuszewski, Tjandra and Clore
6structure evaluationProcheckNMRLaskowski and MacArthur
7pdb displayMolmolpyMolKoradi, Billeter and Wuthrich
8structure evaluationMolProbity3.17Richardson