SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 2 mM [U-15N] Influenza HA fusion peptide G13A, 200 mM [U-2H] DPC, 20 mM [U-2H] acetic acid, 5 mM DTT | 95% H2O/5% D2O | 5 | ambient | 303 | ||
| 2 | 2D 1H-1H NOESY | 2 mM [U-15N] Influenza HA fusion peptide G13A, 200 mM [U-2H] DPC, 20 mM [U-2H] acetic acid, 5 mM DTT | 95% H2O/5% D2O | 5 | ambient | 303 | ||
| 3 | 3D HNHA | 1 mM [U-15N] Influenza HA fusion peptide G13A, 200 mM [U-2H] DPC 20 mM [U-2H] acetic acid, 5 mM DTT | 95% H2O/5% D2O | 5 | ambient | 303 | ||
| 4 | 3D 1H-15N NOESY | 1 mM [U-15N] Influenza HA fusion peptide G13A, 200 mM [U-2H] DPC 20 mM [U-2H] acetic acid, 5 mM DTT | 95% H2O/5% D2O | 5 | ambient | 303 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Sparky | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 40 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | Sparky | Goddard | |
| 2 | data analysis | Sparky | Goddard | |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | refinement | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
| 5 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
