2L0C | pdb_00002l0c

Solution NMR Structure of protein STY4237 (residues 36-120) from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR115

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
2	2D 1H-13C HSQC	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
3	3D HNCO	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
4	3D CBCA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
5	3D HNCACB	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
6	3D 1H-13C arom NOESY	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
7	3D 1H-13C aliph NOESY	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
8	3D 1H-15N NOESY	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
9	HCCH-TOCSY	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
10	3D HBHA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
11	3D C(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3, 10 mM DTT	95% H2O/5% D2O		6.5	ambient	298
12	4D 1H-13C-13C-1H HMQC NOESY	1.1 mM [U-100% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3	100% D2O		6.5	ambient	298
13	2D 1H-13C HSQC	1.1 mM [5% 13C; U-100% 15N] SlR115, 100 mM NaCl, 20 mM MES, 5 mM CaCl2, 0.05 % NaN3	95% H2O/5% D2O		6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
molecular dynamics and simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	40
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	geometry optimization	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	data analysis	AutoStructure	2.1	Huang, Tejero, Powers and Montelione
8	refinement	AutoStructure	2.1	Huang, Tejero, Powers and Montelione
9	data analysis	AutoAssign	2.1	Zimmerman, Moseley, Kulikowski and Montelione
10	chemical shift assignment	AutoAssign	2.1	Zimmerman, Moseley, Kulikowski and Montelione
11	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
12	data analysis	XEASY		Bartels et al.
13	peak picking	XEASY		Bartels et al.
14	chemical shift assignment	XEASY		Bartels et al.
15	collection	TopSpin		Bruker Biospin
16	collection	VnmrJ		Varian
17	chemical shift assignment	PINE		Bahrami, Markley, Assadi, and Eghbalnia
18	data analysis	Sparky		Goddard
19	geometry optimization	TALOS+		Shen, Cornilescu, Delaglio and Bax
20	geometry optimization	PALES		PALES (Zweckstetter, Bax)
21	geometry optimization	REDCAT		Valafar, Prestegard
22	refinement	Xplor-NIH		Schwieters, Kuszewski, Tjandra and Clore
23	refinement	AutoStructure	2.1	Huang, Tejero, Powers and Montelione