2L00

Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 15N] ZNF216-A20-39, 50 uM Zinc-40, 0.1 mM DSS-41, 5 mM TRIS-42, 50 mM sodium chloride-43, 4 mM ubiquitin-44	90% H2O/10% D2O	0.1	7	ambient	298
2	2D 1H-15N HSQC	1.0 mM [U-100% 15N] ZNF216-A20-7, 50 uM Zinc-8, 4 mM MTSL-9, 5 mM TRIS-10, 50 mM sodium chloride-11, 4 mM ubiquitin-12	90% H2O/10% D2O	0.1	7	ambient	298
3	3D 1H-15N NOESY	4 mM ZNF216-A20-1, 50 uM Zinc-2, 0.1 mM DSS-3, 5 mM TRIS-4, 50 mM sodium chloride-5, 1 mM [U-100% 15N] ubiquitin-6	90% H2O/10% D2O	0.1	7	ambient	298
4	3D 1H-15N NOESY	1 mM [U-100% 15N] ZNF216-A20-39, 50 uM Zinc-40, 0.1 mM DSS-41, 5 mM TRIS-42, 50 mM sodium chloride-43, 4 mM ubiquitin-44	90% H2O/10% D2O	0.1	7	ambient	298
5	3D CBCA(CO)NH	0.8 mM [U-100% 13C; U-100% 15N] ZNF216-A20-13, 50 uM Zinc-14, 0.1 mM DSS-15, 5 mM TRIS-16, 50 mM sodium chloride-17, 2 mM ubiquitin-18	90% H2O/10% D2O	0.1	7	ambient	298
6	3D HNCO	0.8 mM [U-100% 13C; U-100% 15N] ZNF216-A20-13, 50 uM Zinc-14, 0.1 mM DSS-15, 5 mM TRIS-16, 50 mM sodium chloride-17, 2 mM ubiquitin-18	90% H2O/10% D2O	0.1	7	ambient	298
7	2D 1H-15N HSQC IPAP	1.0 mM [U-100% 15N] ZNF216-A20-19, 50 uM Zinc-20, 0.1 mM DSS-21, 5 mM TRIS-22, 50 mM sodium chloride-23, 5 % Polyacrylamide gel-24, 4 mM ubiquitin-25	90% H2O/10% D2O	0.1	7	ambient	298
8	2D 1H-15N HSQC IPAP	4 mM ZNF216-A20-26, 50 uM Zinc-27, 0.1 mM DSS-28, 5 mM TRIS-29, 50 mM sodium chloride-30, 5 % Polyacrylamide gel-31, 1 mM [U-100% 15N] ubiquitin-32	90% H2O/10% D2O	0.1	7	ambient	298
9	15N, 13C Half filtered NOESY	0.8 mM [U-100% 13C; U-100% 15N] ZNF216-A20-13, 50 uM Zinc-14, 0.1 mM DSS-15, 5 mM TRIS-16, 50 mM sodium chloride-17, 2 mM ubiquitin-18	90% H2O/10% D2O	0.1	7	ambient	298
10	15N, 13C Half filtered NOESY	2 mM ZNF216-A20-33, 50 uM Zinc-34, 0.1 mM DSS-35, 5 mM TRIS-36, 50 mM sodium chloride-37, 1 mM [U-100% 13C; U-100% 15N] ubiquitin-38	90% H2O/10% D2O	0.1	7	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
Rigid Body Docking, molecular dynamics	Rigid Body docking using HADDOCK (Standard protocol), Fully flexible docking in HADDOCK by standard protocol with reduced electrostatics	TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	500
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	2.1	Bruker Biospin
2	processing	TopSpin	2.1	Bruker Biospin
3	chemical shift assignment	CcpNMR	1.1.15	CCPN
4	chemical shift calculation	CcpNMR	1.1.15	CCPN
5	peak picking	CcpNMR	1.1.15	CCPN
6	data analysis	CcpNMR	1.1.15	CCPN
7	structure solution	X-PLOR NIH	2.14	Schwieters, Kuszewski, Tjandra and Clore
8	refinement	X-PLOR NIH	2.14	Schwieters, Kuszewski, Tjandra and Clore
9	structure solution	HADDOCK	2.0	Cyril Dominguez, Rolf Boelens, Alexandre M.J.J. Bonvin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.