Solution NMR Structure of Ubiquitin thioesterase OTU1 (EC 3.1.2.-) from Mus musculus, Northeast Structural Genomics Consortium Target MmT2A
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 2 | 2D 1H-13C HSQC | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 3 | 3D HNCO | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 4 | 3D CBCA(CO)NH | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 5 | 3D 1H-13C arom NOESY | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 6 | 3D HBHA(CO)NH | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 7 | 3D HNCA | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 8 | 3D 1H-15N NOESY | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 9 | 3D 1H-13C NOESY | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 10 | 3D HCCH-TOCSY | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| 11 | 3D HCCH-TOCSY | 1.1 mM [U-100% 13C; U-100% 15N] MmT2A | 95% H2O/5% D2O | 6.5 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| 2 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 2 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 3 | geometry optimization | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 4 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 5 | geometry optimization | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 6 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 7 | data analysis,refinement | AutoStructure | 2.1 | Huang, Tejero, Powers and Montelione |
| 8 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 9 | collection | TopSpin | Bruker Biospin | |
| 10 | data analysis | Sparky | Goddard | |
| 11 | geometry optimization | TALOS+ | Shen, Cornilescu, Delaglio and Bax | |
| 12 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 13 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
| 14 | processing | MDDGUI | 1.0 | Gutmanas, Arrowsmith |
| 15 | chemical shift assignment | FMCGUI | 2.3 | Lemak, Arrowsmith |
| 16 | refinement | FMCGUI | 2.3 | Lemak, Arrowsmith |
| 17 | structure solution | FMCGUI | 2.3 | Lemak, Arrowsmith |
