2KZR

Solution NMR Structure of Ubiquitin thioesterase OTU1 (EC 3.1.2.-) from Mus musculus, Northeast Structural Genomics Consortium Target MmT2A

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
2	2D 1H-13C HSQC	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
3	3D HNCO	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
4	3D CBCA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
5	3D 1H-13C arom NOESY	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
6	3D HBHA(CO)NH	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
7	3D HNCA	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
8	3D 1H-15N NOESY	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
9	3D 1H-13C NOESY	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
10	3D HCCH-TOCSY	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298
11	3D HCCH-TOCSY	1.1 mM [U-100% 13C; U-100% 15N] MmT2A	95% H2O/5% D2O		6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	geometry optimization	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	data analysis,refinement	AutoStructure	2.1	Huang, Tejero, Powers and Montelione
8	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9	collection	TopSpin		Bruker Biospin
10	data analysis	Sparky		Goddard
11	geometry optimization	TALOS+		Shen, Cornilescu, Delaglio and Bax
12	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
13	data analysis	MOLMOL		Koradi, Billeter and Wuthrich
14	processing	MDDGUI	1.0	Gutmanas, Arrowsmith
15	chemical shift assignment	FMCGUI	2.3	Lemak, Arrowsmith
16	refinement	FMCGUI	2.3	Lemak, Arrowsmith
17	structure solution	FMCGUI	2.3	Lemak, Arrowsmith

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.