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Solution NMR Structure of Ubiquitin thioesterase OTU1 (EC 3.1.2.-) from Mus musculus, Northeast Structural Genomics Consortium Target MmT2A
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 2 2D 1H-13C HSQC 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 3 3D HNCO 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 4 3D CBCA(CO)NH 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 5 3D 1H-13C arom NOESY 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 6 3D HBHA(CO)NH 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 7 3D HNCA 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 8 3D 1H-15N NOESY 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 9 3D 1H-13C NOESY 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 10 3D HCCH-TOCSY 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298 11 3D HCCH-TOCSY 1.1 mM [U-100% 13C; U-100% 15N] MmT2A 95% H2O/5% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis,refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 9 collection TopSpin Bruker Biospin 10 data analysis Sparky Goddard 11 geometry optimization TALOS+ Shen, Cornilescu, Delaglio and Bax 12 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 13 data analysis MOLMOL Koradi, Billeter and Wuthrich 14 processing MDDGUI 1.0 Gutmanas, Arrowsmith 15 chemical shift assignment FMCGUI 2.3 Lemak, Arrowsmith 16 refinement FMCGUI 2.3 Lemak, Arrowsmith 17 structure solution FMCGUI 2.3 Lemak, Arrowsmith