2KZK | pdb_00002kzk

Solution structure of alpha-mannosidase binding domain of Atg34

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
2	3D HNCO	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
3	3D HNCA	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
4	3D HN(CO)CA	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
5	3D CBCA(CO)NH	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
6	3D HNCACB	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
7	3D HN(CO)HA	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
8	3D HBHA(CO)NH	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
9	2D 1H-13C HSQC	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
10	3D HCCH-TOCSY	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
11	3D 1H-13C NOESY	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
12	3D 1H-15N NOESY	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
13	2D (Hb)Cb(CgCd)Hd	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298
14	2D (Hb)Cb(CgCdCe)He	25 mM sodium phosphate-1, 100 mM sodium chloride-2, 2 mM DTT-3, 0.7 mM [U-99% 13C; U-99% 15N] Alpha-mannosidase binding domain of Atg34-4	90% H2O/10% D2O		7.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Varian	INOVA	800

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	Sparky		Goddard
4	peak picking	Sparky		Goddard
5	collection	VNMR		Varian
6	refinement	CYANA		Guntert, Mumenthaler and Wuthrich