Structure of the AML1-ETO Nervy Domain - PKA(RIIa) complex and its contribution to AML1-ETO activity
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 2 | 3D CBCA(CO)NH | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 3 | 3D HNCO | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 4 | 3D HNCACB | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 5 | 3D HCCH-TOCSY | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 6 | 3D HNHA | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 7 | 3D H(CCO)NH | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 8 | 3D 1H-15N NOESY | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| 9 | 3D 1H-13C NOESY | 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) | 95% H2O/5% D2O | 0.0 | 4.0 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | AVANCE | 600 |
| 2 | Varian | AVANCE | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using a combination of NOE and residual dipolar coupling data. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 3 | chemical shift assignment | Sparky | Goddard | |
| 4 | peak picking | Sparky | Goddard | |
| 5 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
| 6 | refinement | CNS | Brunger, A. et al. | |
| 7 | data analysis | Procheck | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho | |
