NMR structure and calcium-binding properties of the tellurite resistance protein TerD from Klebsiella pneumoniae
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 2 | 2D 1H-13C HSQC | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 3 | 3D CBCA(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 4 | 3D HNCACB | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 5 | 3D HNCO | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 6 | 3D HN(CO)CA | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 7 | 3D C(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 8 | 3D 1H-15N NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 9 | 3D 1H-13C NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 10 | 3D HCCH-TOCSY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 11 | 3D HBHA(CO)NH | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 12 | 3D HNHA | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| 13 | 2D 1H-1H NOESY | 20mM potassium phosphate-1 | 90% H2O/10% D2O | 0.02 | 7 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | AURELIA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 500 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | AURELIA | 3.1.6 | Linge, O'Donoghue and Nilges |
| 2 | processing | XwinNMR | 3.5 | Bruker Biospin |
| 3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 4 | chemical shift assignment | VNMR | 5.0 | Johnson, One Moon Scientific |
| 5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
