2KXI

Solution NMR structure of the apoform of NarE (NMB1343)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.3 mM [U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
22D 1H-13C HSQC0.8 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT100% D2O7.3ambient300
33D CBCA(CO)NH0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
43D HNCACB0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
53D HNCO0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
63D HN(CA)CO0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
73D HNCA0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
83D HBHA(CO)NH0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
93D 1H-15N NOESY0.3 mM [U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
103D 1H-13C NOESY0.8 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT100% D2O7.3ambient300
113D HCCH-TOCSY0.8 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT100% D2O7.3ambient300
122D 1H-1H TOCSY0.8 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT100% D2O7.3ambient300
132D 1H-1H NOESY0.6 mM [U-100% 13C; U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
142D 1H-15N HSQC T1 edited0.3 mM [U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
152D 1H-15N HSQC T2 edited0.3 mM [U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
162D 1H-15N NOESY0.3 mM [U-100% 15N] NMB1343, 75 mM sodium chloride, 25 mM sodium phosphate, 0.01 % sodium azide, 0.5 mM TSP, 1 mM DTT90% H2O/10% D2O7.3ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance900
2OxfordAvance750
3BrukerAvance600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS refinement in waterCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPINBruker Biospin
2processingTOPSPINBruker Biospin
3chemical shift assignmentSPARKYGoddard
4peak pickingSPARKYGoddard
5structure solutionCYANAGuntert, Mumenthaler and Wuthrich
6structure solutionTALOSCornilescu, Delaglio and Bax
7refinementCNS