2KX7
Solution structure of the E.coli RcsD-ABL domain (residues 688-795)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
2 | 3D HNCACB | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
3 | 3D HNCO | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
4 | 3D HN(CO)CA | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
5 | 3D HCCH-TOCSY | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
6 | 3D 1H-15N TOCSY | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 | |
8 | 3D 1H-13C NOESY | 33 mM TRIS, 125 mM sodium chloride, 1 mM TCEP | 95% H2O/5% D2O | 0.125 | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | Energy minimization in presence of H2O molecules in CNS/Aria | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 1-2 | Bruker Biospin |
2 | processing | TopSpin | 1-2 | Bruker Biospin |
3 | data analysis | TopSpin | 1-2 | Bruker Biospin |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |