2KVN

Phi29 E-loop hairpin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA100% D2O5.5ambient293
22D DQF-COSY1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA100% D2O5.5ambient274
32D 1H-1H NOESY1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA100% D2O5.5ambient274
42D 1H-1H NOESY1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA100% D2O5.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with no restraint violations
Conformers Calculated Total Number132
Conformers Submitted Total Number30
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1geometry optimizationCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
2refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
3chemical shift assignmentSPARKYGoddard
4chemical shift calculationSPARKYGoddard
5peak pickingSPARKYGoddard
6data analysisSPARKYGoddard
7processingSPARKYGoddard
8collectionVNMRVarian
9data analysisVNMRVarian
10processingVNMRVarian
11data analysisAMBERCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
12data analysisPymolDelano