2KVN | pdb_00002kvn

Phi29 E-loop hairpin

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC	1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA	100% D2O		5.5	ambient	293
2	2D DQF-COSY	1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA	100% D2O		5.5	ambient	274
3	2D 1H-1H NOESY	1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA	100% D2O		5.5	ambient	274
4	2D 1H-1H NOESY	1 mM RNA, 10 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM sodium-EDTA	100% D2O		5.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	500
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with no restraint violations
Conformers Calculated Total Number	132
Conformers Submitted Total Number	30
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	geometry optimization	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
2	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
3	chemical shift assignment	Sparky		Goddard
4	chemical shift calculation	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	data analysis	Sparky		Goddard
7	processing	Sparky		Goddard
8	collection	VNMR		Varian
9	data analysis	VNMR		Varian
10	processing	VNMR		Varian
11	data analysis	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
12	data analysis	PyMOL		Delano