2KVK

Solution structure of ADF/cofilin (LDCOF) from Leishmania donovani


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
22D 1H-13C HSQC aliphatic20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O100% D2O506.5ambient298
33D CBCA(CO)NH20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
43D HNCACB20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
53D HNCO20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
63D HN(CA)CO20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
73D HCCH-TOCSY20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
83D H(CCO)NH20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
93D C(CO)NH20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
103D 1H-15N NOESY20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
113D 1H-13C NOESY aliphatic20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O100% D2O506.5ambient298
123D 1H-13C NOESY aromatic20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O100% D2O506.5ambient298
132D HB(CBCGCD)HD20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
142D HB(CBCGCE)HE20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O95% H2O/5% D2O506.5ambient298
152D 1H-13C HSQC aromatic20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O100% D2O506.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCARA1.8.4Keller and Wuthrich
4structure solutionTALOSTALOS+Cornilescu, Delaglio and Bax
5structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
6data analysisPSVS1.4Bhattacharya and Montelione
7refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
8refinementTALOSTALOS+Cornilescu, Delaglio and Bax
9refinementCINGVuister et al.