Solution structure of the chimera of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 1.12mM [U-13C; U-15N] (chain A)-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02% sodium azide-5 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 2 | 3D 1H-13C NOESY | 1.12mM [U-13C; U-15N] (chain A)-1, 20mM [U-2H] TRIS-2, 100mM sodium chloride-3, 1mM [U-2H] DTT-4, 0.02% sodium azide-5 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry | XwinNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | all calculated structures submitted |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | XwinNMR | 3.5 | Bruker Biospin |
| 2 | processing | NMRPipe | 20031121 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 3 | data analysis | KUJIRA | 0.9820 | Kobayashi, N. |
| 4 | data analysis | NMRView | Johnson, One Moon Scientific | |
| 5 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
| 6 | structure solution | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
| 7 | refinement | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
