Solution structure of the complex of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 2 | 3D 1H-13C NOESY | 0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 3 | 3D_13C,15N-F1 FILTERED 13C-EDITED NOESY | 0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 4 | 3D_13C,15N-F1 FILTERED 15N-EDITED NOESY | 0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 5 | 2D_F2-13C FILTERED NOESY | 0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | all calculated structures submitted |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
| 2 | collection | XwinNMR | 3.5 | Bruker Biospin |
| 3 | processing | NMRPipe | 20031121 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 4 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
| 5 | data analysis | KUJIRA | 0.9820 | Kobayashi, N. |
| 6 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
| 7 | refinement | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
