Structure of the 1,N2-ethenodeoxyguanosine lesion opposite a one-base deletion in duplex DNA
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H COSY | 0.3 mM DNA (5'-D(P*GP*CP*AP*TP*GP*GP*AP*AP*TP*C)-3')-1 | 100% D2O | 100 | 7 | ambient | 298 | |
| 2 | 2D 1H-1H NOESY | 0.3 mM DNA (5'-D(P*GP*CP*AP*TP*GP*GP*AP*AP*TP*C)-3')-1 | 100% D2O | 100 | 7 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 1 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollm | |
