2KSN

Solution Structure of the N-terminal Domain of DC-UbP/UBTD2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-390% H2O/10% D2O6.5ambient298
23D HNHA1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-390% H2O/10% D2O6.5ambient298
33D 1H-15N NOESY1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-390% H2O/10% D2O6.5ambient298
43D CBCA(CO)NH1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
53D HNCACB1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
63D C(CO)NH1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
73D HNCO1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
83D HCCH-TOCSY1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
93D HCCH-COSY1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
103D 1H-13C NOESY1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-690% H2O/10% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingSparkyGoddard
3chemical shift assignmentSparkyGoddard
4structure solutionARIA2.0Linge, O'Donoghue and Nilges
5refinementARIA2.0Linge, O'Donoghue and Nilges
6data analysisProcheckNMRLaskowski and MacArthur