Solution NMR structure of apo Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 2 | 2D 1H-13C HSQC | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 3 | 3D HNCACB | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 4 | 3D CBCA(CO)NH | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 5 | 3D HCCH-TOCSY | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 6 | 3D H(CCO)NH | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 7 | 3D 1H-15N NOESY | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 8 | 3D 1H-13C NOESY | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 9 | 3D HNCO | 2 mM [U-100% 13C; U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 10 | 2D 1H-15N HSQC | 1 mM [U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 11 | 2D 1H-15N TROSY | 1 mM [U-100% 15N] AeSCP-2 | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 12 | 2D 1H-15N HSQC | 1 mM [U-100% 15N] AESCP-2, 15 mg/ml Pf1 phage | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| 13 | 2D 1H-15N TROSY | 1 mM [U-100% 15N] AESCP-2, 15 mg/ml Pf1 phage | 93% H2O/7% D2O | 10 | 7.8 | AMBIENT | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 900 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | 3.0 | P.GUNTERT ET AL. |
| 2 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
| 3 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 5 | chemical shift assignment | PINE | Bahrami, Markley, Assadi, and Eghbalnia | |
| 6 | data analysis | PSVS | Bhattacharya and Montelione | |
| 7 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
| 8 | collection | VnmrJ | Varian | |
| 9 | data analysis | XEASY | Bartels et al. | |
| 10 | refinement | CYANA | 3.0 | P.GUNTERT ET AL. |
