2KRR

Solution structure of the RBD1,2 domains from human nucleolin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.0 mM [U-15N] RBD1,2-5, 100 mM potassium chloride-6, 20 mM [U-2H] sodium acetate-7, 3 mM sodium azide-890% H2O/10% D2O1235.0AMBIENT293
22D 1H-15N HSQC1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
32D 1H-13C HSQC1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
43D CBCA(CO)NH1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
53D C(CO)NH1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
63D HNCO1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
73D HNCA1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
83D HNCACB1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
93D H(CCO)NH1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
103D HCCH-TOCSY1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
113D 1H-15N NOESY1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
123D 1H-13C NOESY1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
133D HCCH-COSY1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
143D HCACO1.0 mM [U-13C; U-15N] RBD1,2-1, 100 mM potassium chloride-2, 20 mM [U-2H] sodium acetate-3, 3 mM sodium azide-490% H2O/10% D2O1235.0AMBIENT293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA2.1P.GUNTERT ET AL.
2collectionVNMR6.1CVarian
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4data analysisSparkyGoddard