2KR4 | pdb_00002kr4

U-box domain of the E3 Ubiquitin Ligase E4B

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
2	2D 1H-13C HSQC	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
3	2D DQF-COSY	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
4	2D 1H-1H NOESY	1 mM U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
5	3D CBCA(CO)NH	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
6	3D HNCACB	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
7	3D HN(CO)CA	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
8	3D H(CCO)NH	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
9	3D HCCH-TOCSY	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
10	3D 1H-15N NOESY	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
11	3D 1H-13C NOESY	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298
12	3D HCCH-COSY	750 uM [U-100% 13C; U-100% 15N] U-box domain of E4B	90% H2O/10% D2O	25	6.5	ambient atm	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing, molecular dynamics	Computed through AMBER9 in water, Computed through AMBER9 in water. Single residues in some models have phi-psi angle combinations that are outside the norm. These are found only for residues that lack experimental constraints and which are therefore poorly defined in the structure.	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe	2009.015.15.35	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	Sparky	3.113	Goddard
3	peak picking	Sparky	3.113	Goddard
4	structure solution	CYANA	2..1	Guntert, Mumenthaler and Wuthrich
5	refinement	Amber	9	Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm