Atomic resolution protein structure determination by three-dimensional transferred echo double resonance solid-state nuclear magnetic resonance spectroscopy
SOLID-STATE NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D TEDOR | 30 mg 1,3-13C glycerol, U 15N entity-1, 50 v/v MPTG-2 | solid | ambient | ||||
| 2 | 3D TEDOR | 30 mg 2-13C glycerol, U 15N entity-3, 50 v/v MPTG-4 | solid | ambient | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | Infinity Plus | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DGSA-distance geometry simulated annealing, simulated annealing | DG sub-embed was used from initial extend geometry, Two steps of simulated annealing | X-PLOR NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 250 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 4 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR NIH | 2.21 | Schwieters, Kuszewski, Tjandra and Clore |
| 2 | peak picking | Sparky | Goddard | |
| 3 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
