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Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 1-2 mM RNA 100% D2O 7.0 ambient 295 2 2D DQF-COSY 1-2 mM RNA 100% D2O 7.0 ambient 295 3 2D 1H-1H NOESY 1-2 mM RNA 100% D2O 7.0 ambient 295 4 2D 1H-1H TOCSY 1-2 mM RNA 100% D2O 7.0 ambient 295 5 2D 1H-1H NOESY 1-2 mM RNA 100% D2O 7.0 ambient 283 6 2D 1H-1H NOESY 1-2 mM RNA 90% H2O/10% D2O 7.0 ambient 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing in water box X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, C.D. et al. 2 data analysis CARA Keller, R. et al. 3 collection TopSpin Bruker Biospin