2KOT

Solution structure of S100A13 with a drug amlexanox


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
22D 1H-13C HSQC1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
32D 1H-1H NOESY1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
43D CBCA(CO)NH1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
53D C(CO)NH1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
63D HNCO1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
73D HNCA1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
83D HBHA(CO)NH1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
93D H(CCO)NH1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
103D HCCH-TOCSY1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
113D 1H-15N NOESY1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
123D 1H-13C NOESY1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
133D 13C-filter NOESY1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-290% H2O/10% D2O0.15.6ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA700
NMR Refinement
MethodDetailsSoftware
simulated annealing, DGSA-distance geometry simulated annealing,distance geometry,simulated annealingARIA/CNSARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number18
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionARIA2.2Linge, O'Donoghue, Nilges
2peak pickingARIA2.2Linge, O'Donoghue, Nilges
3chemical shift assignmentSparkyGoddard
4chemical shift calculationSparkyGoddard
5collectionVnmrJVarian
6processingVnmrJVarian
7data analysisTALOSCornilescu, Delaglio and Bax
8docking the aria calculated protein with ligand (amlexanox)HADDOCK2.0Dr. A.M.J.J. Bonvin
9refinementARIA2.2Linge, O'Donoghue, Nilges