Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
| 2 | 2D 1H-1H COSY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
| 3 | 2D 1H-1H NOESY | 1mM e1-2 | 80% hexafluoroisopropanol/20% H2O | 4.5 | ambient | 300 | ||
| 4 | 2D 1H-1H TOCSY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 | ||
| 5 | 2D 1H-1H COSY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 | ||
| 6 | 2D 1H-1H NOESY | 1mM e1-1 | 80% hexafluoroisopropanol/20%D2O | 4.5 | ambient | 300 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm | |
| 2 | structure solution | CYANA | Guntert, Mumenthaler, Wuthrich | |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax | |
| 4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
| 5 | peak picking | NMRView | Johnson, One Moon Scientific | |
