2KNM

Solution structure of the cyclotide cycloviolacin O2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY1-2 mM cycloviolacin O290% H2O/10% D2O6.1ambient303
22D DQF-COSY1-2 mM cycloviolacin O290% H2O/10% D2O6.1ambient303
32D 1H-1H NOESY1-2 mM cycloviolacin O290% H2O/10% D2O6.1ambient303
42D 1H-1H TOCSY1-2 mM cycloviolacin O2100% D2O6.1ambient303
52D 1H-1H NOESY1-2 mM cycloviolacin O2100% D2O6.1ambient303
62D 1H-1H TOCSY1-2 mM cycloviolacin O290% H2O/10% D2O6.1ambient303
72D 1H-1H NOESY1-2 mM cycloviolacin O290% H2O/10% D2O6.1ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingStructures were calculated using torsion angle dynamics within CNS and subsequently refined and energy minimised using cartesian dynamics in explicit water.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1Varian
2processingVNMR6.1Varian
3data analysisCARAKeller and Wuthrich
4chemical shift assignmentCARAKeller and Wuthrich
5structure solutionCYANA2.0Guntert, Mumenthaler and Wuthrich
6refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read