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Solution NMR Structure of de novo designed ferredoxin-like fold protein, Northeast Structural Genomics Consortium Target OR15
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 2 2D 1H-13C HSQC 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 3 3D CBCA(CO)NH 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 4 3D HNCO 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 5 3D HNCA 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 6 3D HNCACB 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 7 3D H(CCO)NH 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 8 3D HN(CO)CA 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303 9 3D simutaneous 1H, 15N, 13C NOESY 0.47 mM [U-100% 13C; U-100% 15N] OR15 95% H2O/5% D2O 6.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 refinement CYANA Guntert, Mumenthaler and Wuthrich 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 data analysis CYANA Guntert, Mumenthaler and Wuthrich 5 refinement AutoStructure Huang, Tejero, Powers and Montelione 6 data analysis AutoStructure Huang, Tejero, Powers and Montelione 7 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 8 data analysis AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 9 chemical shift assignment XEASY Bartels et al. 10 data analysis XEASY Bartels et al. 11 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 collection TopSpin Bruker Biospin 13 collection VnmrJ Varian 14 data analysis TALOS Cornilescu, Delaglio and Bax