Solution NMR Structure of de novo designed ferredoxin-like fold protein, Northeast Structural Genomics Consortium Target OR15
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 2 | 2D 1H-13C HSQC | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 3 | 3D CBCA(CO)NH | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 4 | 3D HNCO | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 5 | 3D HNCA | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 6 | 3D HNCACB | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 7 | 3D H(CCO)NH | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 8 | 3D HN(CO)CA | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| 9 | 3D simutaneous 1H, 15N, 13C NOESY | 0.47 mM [U-100% 13C; U-100% 15N] OR15 | 95% H2O/5% D2O | 6.5 | ambient | 303 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry, simulated annealing, molecular dynamics | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | Brunger A. T. et.al. | |
| 2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 4 | data analysis | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | refinement | AutoStructure | Huang, Tejero, Powers and Montelione | |
| 6 | data analysis | AutoStructure | Huang, Tejero, Powers and Montelione | |
| 7 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
| 8 | data analysis | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
| 9 | chemical shift assignment | XEASY | Bartels et al. | |
| 10 | data analysis | XEASY | Bartels et al. | |
| 11 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 12 | collection | TopSpin | Bruker Biospin | |
| 13 | collection | VnmrJ | Varian | |
| 14 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
